Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1327

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9694 and 9695 are separated by 776 nucleotides9695 and 9696 are separated by 325 nucleotides mRNA_1326: 9694 - KOG1239 Inner membrane protein translocase involved in respiratory chain assembly, at 227 to 1,696 9694 mRNA_1327: 9695 - K14684 SLC25A23S solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41, at 2,473 to 5,541 9695 mRNA_1328: 9696 - SUPERFAMILY--SSF82708, at 5,867 to 7,721 9696

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,888 - -0.3
1,889 - -0.3
2,000 + -0.6
2,009 + +1.1
2,141 - -1.3
2,152 - -0.0
2,166 + -0.1
2,167 + -1.2
2,173 + -0.4
2,180 - +1.2
2,180 + -0.2
2,189 + +0.6
2,189 + -0.2
2,197 + -3.6
2,246 + +0.7
2,333 - -3.7
2,471 + -1.2
2,490 + -2.1
2,751 + -1.0
2,779 - +0.6
3,057 + 9695 mRNA_1327 0.19 +0.1
3,065 + 9695 mRNA_1327 0.19 -1.2
3,139 - 9695 mRNA_1327 0.22 -1.8
3,139 - 9695 mRNA_1327 0.22 +0.0
3,354 - 9695 mRNA_1327 0.29 +0.5
3,360 + 9695 mRNA_1327 0.29 -2.6
3,360 + 9695 mRNA_1327 0.29 +1.0
3,445 - 9695 mRNA_1327 0.32 +0.3
3,475 - 9695 mRNA_1327 0.33 -0.3
3,516 - 9695 mRNA_1327 0.34 +2.0
3,608 - 9695 mRNA_1327 0.37 -0.3
3,614 + 9695 mRNA_1327 0.37 -0.4
3,714 - 9695 mRNA_1327 0.40 -0.9
3,728 + 9695 mRNA_1327 0.41 -0.9
3,758 + 9695 mRNA_1327 0.42 +0.1
3,761 - 9695 mRNA_1327 0.42 -0.6
3,771 - 9695 mRNA_1327 0.42 -0.4
3,792 - 9695 mRNA_1327 0.43 -0.5
3,798 + 9695 mRNA_1327 0.43 -0.1
3,799 + 9695 mRNA_1327 0.43 -2.2
3,921 - 9695 mRNA_1327 0.47 -0.3
3,997 + 9695 mRNA_1327 0.50 -1.9
3,998 - 9695 mRNA_1327 0.50 -1.1
3,998 - 9695 mRNA_1327 0.50 -0.3
4,008 - 9695 mRNA_1327 0.50 -1.5
4,193 - 9695 mRNA_1327 0.56 +0.4
4,209 - 9695 mRNA_1327 0.57 -1.3
4,346 + 9695 mRNA_1327 0.61 -1.3
4,346 + 9695 mRNA_1327 0.61 -0.4
4,487 - 9695 mRNA_1327 0.66 -0.4
4,498 - 9695 mRNA_1327 0.66 -1.5
4,512 - 9695 mRNA_1327 0.66 -1.8
4,598 + 9695 mRNA_1327 0.69 -1.2
4,763 - 9695 mRNA_1327 0.75 -1.5
4,938 + 9695 mRNA_1327 0.80 +0.2
5,367 - -1.2
5,399 - -1.2
5,655 - -0.8
5,846 + +2.2
5,952 - -0.8
6,136 + 9696 mRNA_1328 0.15 -1.5
6,296 - 9696 mRNA_1328 0.23 -0.6
6,297 + 9696 mRNA_1328 0.23 +1.1
6,319 + 9696 mRNA_1328 0.24 -1.0
6,399 - 9696 mRNA_1328 0.29 -1.2
6,430 - 9696 mRNA_1328 0.30 +2.0
6,442 + 9696 mRNA_1328 0.31 +0.5
6,445 - 9696 mRNA_1328 0.31 -0.6

Or see this region's nucleotide sequence