Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1350

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9717 and 9718 are separated by 238 nucleotides9718 and 9719 are separated by 440 nucleotides mRNA_1349: 9717 - K12852 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component, at 56,192 to 59,943 9717 mRNA_1350: 9718 - KOG3376 Uncharacterized conserved protein, at 60,182 to 60,785 9718 mRNA_1351: 9719 - Hypothetical Protein, at 61,226 to 65,910 9719

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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59,959 - -0.0
60,006 + +0.5
60,135 - +2.7
60,141 - -0.6
60,164 + +0.0
60,184 + -1.1
60,317 + 9718 mRNA_1350 0.22 -0.1
60,319 + 9718 mRNA_1350 0.23 -0.2
60,452 - 9718 mRNA_1350 0.45 +3.1
60,892 + +0.3
61,038 - -0.2
61,050 + +0.9
61,054 + +1.0
61,150 + +1.4
61,209 + -0.9
61,304 + +0.6
61,334 - -0.8
61,404 - +1.2
61,458 - -0.9
61,480 - -0.2
61,493 + +0.7
61,772 - 9719 mRNA_1351 0.12 -0.5

Or see this region's nucleotide sequence