Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1365

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9733 and 9734 are separated by 159 nucleotides mRNA_1365: 9733 - K17260 ACTR2, ARP2 actin-related protein 2, at 103,522 to 105,237 9733 mRNA_1366: 9734 - K00661 maa maltose O-acetyltransferase, at 105,397 to 106,460 9734

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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102,560 + -0.2
102,685 - +0.6
102,697 - -1.1
102,698 + -0.7
102,704 + -0.5
102,818 - -1.6
102,856 + +0.0
102,857 + +0.0
105,327 - +1.3
105,739 - 9734 mRNA_1366 0.32 +0.8
106,049 + 9734 mRNA_1366 0.61 +0.5
106,165 - 9734 mRNA_1366 0.72 +0.5
106,178 + 9734 mRNA_1366 0.73 -1.2

Or see this region's nucleotide sequence