Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1374

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9742 and 9743 are separated by 610 nucleotides mRNA_1374: 9742 - K01733 thrC threonine synthase, at 121,119 to 123,367 9742 mRNA_1375: 9743 - K08139 HXT MFS transporter, SP family, sugar-H+ symporter, at 123,978 to 126,769 9743

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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120,202 - +0.2
120,206 + +0.2
120,214 - +0.8
120,255 - -0.2
120,679 + +0.9
120,695 - -0.4
120,705 + -0.1
120,819 - -0.8
120,826 + +1.5
120,920 - +0.5
120,937 - +0.1
120,970 + +1.2
120,971 - +0.3
120,985 + +0.3
120,987 - -0.4
120,993 + -0.0
121,024 + +1.3
123,367 + -1.3
123,542 + -0.1
123,647 - -0.1
123,653 + +0.2
123,680 - +2.0
123,797 + -2.2
123,803 - +0.5
123,809 - -1.4
123,822 + +0.5
123,838 - -0.5
123,859 - +1.0
123,868 + -1.4
123,997 + -0.5
124,003 - +0.9
124,006 - -0.9
124,049 - +0.0
124,119 - +0.7

Or see this region's nucleotide sequence