Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1394

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9761 and 9762 are separated by 12 nucleotides mRNA_1393: 9761 - Hypothetical Protein, at 163,263 to 164,488 9761 mRNA_1394: 9762 - K04907 KCNH4 potassium voltage-gated channel Eag-related subfamily H member 4, at 164,501 to 165,028 9762

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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163,586 - 9761 mRNA_1393 0.26 -0.4
163,730 - 9761 mRNA_1393 0.38 +0.8
164,880 + 9762 mRNA_1394 0.72 +1.0
164,931 - 9762 mRNA_1394 0.81 -0.6
165,244 - +1.5
165,470 + -0.9
165,489 - -0.7
165,693 - -0.3
165,772 - +0.2
165,835 + -0.5
165,942 - +1.6

Or see this region's nucleotide sequence