Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1446

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9814 and 9815 are separated by 687 nucleotides mRNA_1446: 9814 - BLAST Mucin-17 [Rhizoctonia solani], at 303,145 to 306,587 9814 mRNA_1447: 9815 - ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 307,275 to 311,482 9815

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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302,264 + +1.1
302,284 + -0.7
302,403 - +1.3
302,446 - +0.6
302,461 + +0.2
302,484 + +0.2
302,502 - +0.5
302,512 - +1.1
302,535 - +0.3
302,587 - -1.6
302,594 + -0.3
302,650 + +0.6
302,682 + -0.4
302,704 - -1.9
302,726 + +0.2
302,740 - -2.8
302,797 + +0.5
302,828 + -1.6
302,836 - -0.2
302,844 - +0.0
302,844 - -0.6
302,844 - -0.6
302,851 - -0.3
302,854 + -1.5
302,859 + +0.1
302,860 - -1.0
302,861 - +0.5
302,862 + -0.7
302,868 - +0.0
302,874 - +0.0
302,889 + +0.6
302,890 - -0.0
302,914 - -3.1
302,916 + -1.2
302,931 + +0.0
302,931 - -0.2
302,933 - -0.2
302,933 - -0.3
302,933 - -0.0
302,938 + +1.6
302,939 + -0.0
302,944 - +0.3
302,947 + -0.6
302,950 - -0.0
302,950 + +0.4
302,951 - +0.2
302,955 + -1.4
302,957 + -1.6
302,959 - -1.4
302,959 + -0.2
302,959 - -0.4
302,964 + -1.3
302,978 + +2.0
303,083 + -1.9
303,091 + -2.3
303,099 + -1.4
303,102 - -0.8
303,106 + +0.4
304,148 - 9814 mRNA_1446 0.29 +0.2
306,550 + -0.5
306,798 + +0.2
307,047 - +0.9
307,059 + -0.0
307,214 + -0.0
307,215 - -0.5
307,518 + +0.1

Or see this region's nucleotide sequence