Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1461

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9828 and 9829 are separated by 700 nucleotides9829 and 9830 are separated by 349 nucleotides mRNA_1460: 9828 - K06911 K06911 uncharacterized protein, at 344,701 to 345,995 9828 mRNA_1461: 9829 - K02503 HINT1, hinT, hit histidine triad (HIT) family protein, at 346,696 to 347,592 9829 mRNA_1462: 9830 - K01764 E4.4.1.17 cytochrome c heme-lyase, at 347,942 to 349,022 9830

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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345,883 + +0.4
345,887 - -0.6
345,887 - +1.8
346,045 + +0.8
346,183 - -0.8
346,184 - +1.4
346,320 - +1.8
346,483 + -0.7
346,504 - -0.6
346,922 + 9829 mRNA_1461 0.25 +0.4
347,199 + 9829 mRNA_1461 0.56 +0.7
347,208 + 9829 mRNA_1461 0.57 +0.5
347,287 + 9829 mRNA_1461 0.66 -0.4
347,330 + 9829 mRNA_1461 0.71 +0.9
347,489 + 9829 mRNA_1461 0.88 +0.9
347,761 + -0.4
347,872 + +0.2

Or see this region's nucleotide sequence