Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1487

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9854 and 9855 are separated by 641 nucleotides9855 and 9856 are separated by 258 nucleotides mRNA_1486: 9854 - K11085 msbA ATP-binding cassette, subfamily B, bacterial MsbA, at 414,021 to 419,409 9854 mRNA_1487: 9855 - K01883 CARS, cysS cysteinyl-tRNA synthetase, at 420,051 to 423,071 9855 mRNA_1488: 9856 - K15371 GDH2 glutamate dehydrogenase, at 423,330 to 427,670 9856

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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419,060 + +1.3
419,064 - -0.0
419,129 - +2.0
419,222 + +0.7
419,388 - -0.5
419,393 + +1.0
419,479 - +1.9
419,488 + +0.8
419,532 - -0.0
419,537 - +1.7
419,545 + -0.1
419,682 - +0.3
419,702 + +0.5
419,785 + -1.2
419,840 + -0.3
421,622 + 9855 mRNA_1487 0.52 +0.9
423,352 - -0.6
423,472 - -1.3
423,604 - +1.4
423,724 - +1.0
423,778 + 9856 mRNA_1488 0.10 -1.4
423,835 + 9856 mRNA_1488 0.12 -1.2

Or see this region's nucleotide sequence