Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1494

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9862 and 9863 are separated by 321 nucleotides mRNA_1494: 9862 - HMMPfam-Haloacid dehalogenase-like hydrolase-PF13419,SUPERFAMILY--SSF56784, at 443,115 to 444,117 9862 mRNA_1495: 9863 - Hypothetical Protein, at 444,439 to 447,391 9863

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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442,150 - +1.0
442,206 + +0.2
442,233 + -0.1
442,281 - -0.6
442,342 + +0.6
442,435 - -0.4
442,725 + -0.4
442,741 + -0.5
442,750 - -0.4
442,892 + +1.4
443,007 - +1.5
443,013 - +0.2
443,017 - +0.6
443,017 - +1.0
443,022 + +1.0
443,024 + +0.1
443,027 - -0.1
443,033 + -0.1
443,037 + +0.8
443,040 - -0.2
443,048 + -0.7
443,053 - -0.3
443,149 - +0.4
443,193 + +0.7
443,604 - 9862 mRNA_1494 0.49 +0.1
443,886 + 9862 mRNA_1494 0.77 +1.0
443,915 + 9862 mRNA_1494 0.80 +1.0
444,173 - +0.2
444,315 + +2.0
444,320 - -0.5
444,329 + -0.3
444,344 - -1.4
444,451 - -0.3
444,457 + +0.4
444,491 - -0.4
444,495 - -0.5
444,496 + +0.1
444,501 - -1.2
444,632 - +1.5
444,777 - 9863 mRNA_1495 0.11 +0.1
444,931 - 9863 mRNA_1495 0.17 -1.0
444,932 - 9863 mRNA_1495 0.17 -0.0

Or see this region's nucleotide sequence