Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1507

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9874 and 9875 are separated by 652 nucleotides9875 and 9876 are separated by 359 nucleotides mRNA_1506: 9874 - Hypothetical Protein, at 468,569 to 469,292 9874 mRNA_1507: 9875 - HMMPfam-Cupin domain-PF07883,SUPERFAMILY--SSF51182, at 469,945 to 470,941 9875 mRNA_1508: 9876 - KOG3140 Predicted membrane protein, at 471,301 to 473,619 9876

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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469,709 - -0.4
469,768 + +2.0
469,779 - +0.9
469,856 + -0.8
469,874 - -0.3
469,883 + -0.1
469,976 - -0.8
469,999 - +0.1
470,135 + 9875 mRNA_1507 0.19 +0.9
470,240 - 9875 mRNA_1507 0.30 -0.4
470,253 + 9875 mRNA_1507 0.31 -1.9
470,395 + 9875 mRNA_1507 0.45 +0.8
470,410 - 9875 mRNA_1507 0.47 +0.2
470,444 + 9875 mRNA_1507 0.50 -1.1
470,449 + 9875 mRNA_1507 0.51 -2.5
470,463 - 9875 mRNA_1507 0.52 -0.3
470,469 + 9875 mRNA_1507 0.53 -0.1
470,700 + 9875 mRNA_1507 0.76 -0.8
470,717 - 9875 mRNA_1507 0.77 +0.3
470,743 - 9875 mRNA_1507 0.80 +0.7
470,869 - +1.4
470,929 - -0.5
471,348 + -1.0

Or see this region's nucleotide sequence