Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1528

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9895 and 9896 are separated by 534 nucleotides9896 and 9897 are separated by 368 nucleotides mRNA_1527: 9895 - KOG3272 Predicted coiled-coil protein, at 515,504 to 516,509 9895 mRNA_1528: 9896 - K06030 MFN mitofusin, at 517,044 to 520,163 9896 mRNA_1529: 9897 - K12605 CNOT2, NOT2 CCR4-NOT transcription complex subunit 2, at 520,532 to 522,546 9897

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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516,572 + +0.0
516,723 + +0.5
516,861 + +0.4
516,909 - -0.2
517,001 - +0.1
517,010 - +0.3
517,027 - +0.1
517,140 + +1.8
520,204 + +1.1
520,231 - +1.6
520,336 - -1.1
520,533 - -2.6
520,544 - -0.9
520,633 - -0.3

Or see this region's nucleotide sequence