Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1549

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9916 and 9917 are separated by 854 nucleotides9917 and 9918 are separated by 58 nucleotides mRNA_1548: 9916 - K07937 ARF1 ADP-ribosylation factor 1, at 566,553 to 567,814 9916 mRNA_1549: 9917 - BLAST putative TspO/MBR family containing protein [Rhizocto..., at 568,669 to 569,316 9917 mRNA_1550: 9918 - HMMPfam-Methyltransferase domain-PF13489,SUPERFAMILY--SSF53335, at 569,375 to 570,862 9918

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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567,983 + +0.5
568,171 - +0.4
568,282 - -0.7
568,295 - +0.4
568,444 - -0.0
568,450 - +1.7
568,461 + +0.5
568,583 + -0.7
568,864 - 9917 mRNA_1549 0.30 +0.5
568,905 + 9917 mRNA_1549 0.36 +0.1
568,919 - 9917 mRNA_1549 0.39 -0.6
569,026 - 9917 mRNA_1549 0.55 -0.1
569,044 + 9917 mRNA_1549 0.58 +0.5
569,189 + 9917 mRNA_1549 0.80 +0.7
569,311 + -0.3
569,342 + -2.4
569,465 - -0.5
569,468 + -0.9
569,875 - 9918 mRNA_1550 0.34 +0.4

Or see this region's nucleotide sequence