Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1588

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9955 and 9956 are separated by 307 nucleotides9956 and 9957 are separated by 116 nucleotides mRNA_1587: 9955 - HMMPfam-Protein of unknown function (DUF3759)-PF12585, at 664,438 to 664,902 9955 mRNA_1588: 9956 - HMMPfam-Domain of unknown function (DUF202)-PF02656, at 665,210 to 666,583 9956 mRNA_1589: 9957 - Hypothetical Protein, at 666,700 to 668,966 9957

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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664,212 - -0.4
664,213 - -0.3
664,272 + +0.7
664,322 - +0.1
664,324 + +0.8
664,353 - +0.2
664,364 + +1.2
664,370 + -0.4
664,441 - -0.1
664,530 - 9955 mRNA_1587 0.20 -0.9
664,551 - 9955 mRNA_1587 0.24 +0.5
664,682 - 9955 mRNA_1587 0.52 +2.3
664,794 - 9955 mRNA_1587 0.77 -1.9
664,810 - 9955 mRNA_1587 0.80 -0.7
664,942 + +0.3
664,970 - +0.4
664,989 - -1.1
665,109 - +1.2
665,116 + -0.2
665,136 + +0.4
665,256 - +0.4
665,262 + +0.9
665,263 + +0.3
665,294 + +0.9
665,302 + +0.6
665,405 - 9956 mRNA_1588 0.14 -0.8
665,452 - 9956 mRNA_1588 0.18 -0.6
665,565 - 9956 mRNA_1588 0.26 -0.3
665,581 + 9956 mRNA_1588 0.27 -0.5
665,589 + 9956 mRNA_1588 0.28 +0.2
665,742 + 9956 mRNA_1588 0.39 -0.9
666,727 + -0.6
667,153 + 9957 mRNA_1589 0.20 +2.4

Or see this region's nucleotide sequence