Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1596

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9963 and 9964 are separated by 380 nucleotides9964 and 9965 are separated by 89 nucleotides mRNA_1595: 9963 - K13342 PEX5, PXR1 peroxin-5, at 683,358 to 685,744 9963 mRNA_1596: 9964 - K14557 UTP6 U3 small nucleolar RNA-associated protein 6, at 686,125 to 688,577 9964 mRNA_1597: 9965 - Hypothetical Protein, at 688,667 to 689,443 9965

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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685,661 + -2.0
685,782 + -0.7
685,796 + +0.4
685,821 - +0.4
685,917 + +0.2
685,922 - -0.7
685,922 - -0.6
685,943 + -0.9
685,954 + -1.3
685,956 - +0.1
685,956 + -0.1
686,111 - -1.5
686,450 + 9964 mRNA_1596 0.13 -1.5
688,604 + +0.4
689,344 + 9965 mRNA_1597 0.87 -0.6
689,416 + +0.3
689,508 + -0.7
689,522 + -2.8
689,565 + +0.5

Or see this region's nucleotide sequence