Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1664

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10031 and 10032 are separated by 427 nucleotides10032 and 10033 are separated by 21 nucleotides10033 and 10034 are separated by 293 nucleotides mRNA_1663: 10031 - ProSiteProfiles-Gram-positive cocci surface proteins LPxTG motif profile.-PS50847, at 838,138 to 838,939 10031 mRNA_1664: 10032 - Hypothetical Protein, at 839,367 to 840,051 10032 mRNA_1665: 10033 - K03358 APC11 anaphase-promoting complex subunit 11, at 840,073 to 840,626 10033 mRNA_1666: 10034 - HMMPfam-Nucleolar protein 12 (25kDa)-PF09805, at 840,920 to 841,915 10034

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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839,064 - -2.0
839,078 - -1.4
839,433 + -1.2
839,460 + 10032 mRNA_1664 0.14 -1.5
839,487 - 10032 mRNA_1664 0.18 -0.6
839,690 + 10032 mRNA_1664 0.47 -0.3
839,700 + 10032 mRNA_1664 0.49 -0.8
839,860 - 10032 mRNA_1664 0.72 +0.5
840,139 + 10033 mRNA_1665 0.12 -0.5
840,625 + +0.4
840,748 + +0.6
840,754 - -1.1
840,754 - +0.2
840,879 - +1.2

Or see this region's nucleotide sequence