Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1673

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10040 and 10041 are separated by 235 nucleotides mRNA_1672: 10040 - K00382 DLD, lpd, pdhD dihydrolipoamide dehydrogenase, at 855,388 to 857,888 10040 mRNA_1673: 10041 - Hypothetical Protein, at 858,124 to 858,750 10041

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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858,098 - +0.2
858,114 - +0.6
858,567 + 10041 mRNA_1673 0.71 -1.0
858,570 + 10041 mRNA_1673 0.71 +0.7
858,983 - -0.2
859,279 - -1.1
859,285 + +2.0
859,330 + -0.1
859,391 - +1.6
859,430 - +0.2
859,430 - -0.1
859,539 + +0.4
859,578 + +0.7
859,685 + +0.4

Or see this region's nucleotide sequence