Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1676

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10043 and 10044 are separated by 857 nucleotides mRNA_1675: 10043 - K01424 E3.5.1.1, ansA, ansB L-asparaginase, at 863,051 to 864,755 10043 mRNA_1676: 10044 - SUPERFAMILY--SSF81383, at 865,613 to 866,688 10044

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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864,812 - +2.4
865,105 - -1.1
865,106 - -0.5
865,123 + +1.3
865,386 + +0.4
865,423 - +0.2
865,462 + +0.9
865,695 - +0.2
865,786 + 10044 mRNA_1676 0.16 -0.1
866,166 + 10044 mRNA_1676 0.51 -1.3
866,224 + 10044 mRNA_1676 0.57 -1.1
866,282 - 10044 mRNA_1676 0.62 +0.8
866,303 - 10044 mRNA_1676 0.64 -1.4
866,395 + 10044 mRNA_1676 0.73 -3.8
866,397 - 10044 mRNA_1676 0.73 -3.9
866,433 + 10044 mRNA_1676 0.76 -0.8
866,749 + -3.9
866,800 + -0.9
867,217 + -0.5

Or see this region's nucleotide sequence