Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1680

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10047 and 10048 are separated by 676 nucleotides10048 and 10049 are separated by 491 nucleotides mRNA_1679: 10047 - BLAST cyclin-like F-box domain containing protein [Rhod..., at 873,109 to 875,707 10047 mRNA_1680: 10048 - BLAST cyclin-like F-box domain containing protein [Rhod..., at 876,384 to 878,826 10048 mRNA_1681: 10049 - K03126 TAF12 transcription initiation factor TFIID subunit 12, at 879,318 to 879,933 10049

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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875,388 - 10047 mRNA_1679 0.88 +0.9
875,470 + -0.4
875,488 + +0.7
875,722 - +1.6
875,731 + +0.1
875,901 - +0.6
875,939 - +0.6
876,033 - +0.3
876,159 - -1.7
876,375 - +0.5
876,383 + -1.4
876,601 - +0.3
876,643 - 10048 mRNA_1680 0.11 -1.3
876,861 - 10048 mRNA_1680 0.20 -1.0
877,048 - 10048 mRNA_1680 0.27 -1.4
877,139 + 10048 mRNA_1680 0.31 -0.5
877,365 - 10048 mRNA_1680 0.40 +0.1
877,378 - 10048 mRNA_1680 0.41 -0.5
877,622 - 10048 mRNA_1680 0.51 +0.3
877,629 + 10048 mRNA_1680 0.51 -1.6
877,647 + 10048 mRNA_1680 0.52 -1.5
877,704 + 10048 mRNA_1680 0.54 -0.9
877,799 - 10048 mRNA_1680 0.58 -1.1
878,210 - 10048 mRNA_1680 0.75 -0.4
878,533 - 10048 mRNA_1680 0.88 -1.4
878,565 + 10048 mRNA_1680 0.89 +0.3
878,565 + 10048 mRNA_1680 0.89 +3.9
878,588 - -1.1
878,742 + +0.7
878,857 - -1.2
879,009 + -0.1
879,132 + -0.6
879,135 + -0.5
879,274 + +1.3

Or see this region's nucleotide sequence