Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1688

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10056 and 10057 are separated by 307 nucleotides mRNA_1688: 10056 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 895,835 to 896,742 10056 mRNA_1689: 10057 - KOG1286 Amino acid transporters, at 897,050 to 899,959 10057

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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894,857 + -0.6
894,886 + -1.0
895,452 - -1.0
895,618 + +0.6
895,838 - -1.5
896,599 - 10056 mRNA_1688 0.84 -0.4
896,732 - +0.6
896,886 - -0.2
896,912 - +0.9
896,970 - -0.7
897,083 - +0.8
897,170 - +0.2
897,333 + +1.8
897,355 + 10057 mRNA_1689 0.10 +0.4
897,468 - 10057 mRNA_1689 0.14 +0.6
897,532 + 10057 mRNA_1689 0.17 -1.5
897,723 - 10057 mRNA_1689 0.23 +0.5

Or see this region's nucleotide sequence