Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1702

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10069 and 10070 are separated by 428 nucleotides mRNA_1701: 10069 - K03522 fixB, etfA electron transfer flavoprotein alpha subunit, at 928,577 to 930,398 10069 mRNA_1702: 10070 - Hypothetical Protein, at 930,827 to 931,156 10070

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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930,270 + -1.7
930,285 - -2.8
930,422 + +0.1
930,424 - -1.3
930,429 + +3.0
930,452 + +1.2
930,453 + -0.3
930,454 - +1.6
930,558 + +0.8
930,578 + -0.6
930,582 - -0.3
930,587 + +1.1
930,890 - 10070 mRNA_1702 0.19 +0.1
931,021 + 10070 mRNA_1702 0.59 -1.4
931,167 + +0.3
931,192 + +0.1
931,330 + +0.7
931,475 + +0.8
931,491 + -1.7
931,536 + -0.2
931,628 + +0.8
931,645 - +1.3
931,653 + +0.1
931,660 + +0.4
931,700 + -0.0
931,727 + +1.2
931,734 - +0.3
931,740 - -3.5
931,747 + -0.3
931,750 - -0.2
931,758 + +0.8
931,765 - +0.3
931,797 - +0.5
931,895 - +0.8
931,897 - -0.3
931,903 + +2.4
931,913 - +1.8
931,925 + +1.5
932,045 + -0.6
932,046 - +0.1
932,046 - -0.7
932,066 - +0.4
932,072 + -0.2
932,075 - +1.6

Or see this region's nucleotide sequence