Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1705

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10072 and 10073 are separated by 416 nucleotides mRNA_1704: 10072 - K17777 TIM9 mitochondrial import inner membrane translocase subunit TIM9, at 936,376 to 936,792 10072 mRNA_1705: 10073 - K03264 EIF6 translation initiation factor 6, at 937,209 to 938,526 10073

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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936,214 + -0.1
937,810 - 10073 mRNA_1705 0.46 +0.5
938,480 + +0.3
938,508 + +0.9
938,551 - -0.6
938,553 + -1.1
938,556 - -0.4
938,558 + +1.0
938,563 + +0.8
938,563 + -0.8
938,570 + -1.1
938,571 + -0.7
938,620 - +2.9
938,634 - -0.1
938,634 + +0.4
938,636 - -2.4
938,653 - -3.8
938,658 - +0.4
938,666 - +0.6
938,675 - -1.5
938,678 - -0.7
938,684 - +0.6
938,686 - +0.0
938,686 + -2.0
938,691 - -0.8
938,702 - +0.3

Or see this region's nucleotide sequence