Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1707

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10074 and 10075 overlap by 4 nucleotides mRNA_1706: 10074 - K08286 E2.7.11.- protein-serine/threonine kinase, at 343 to 1,191 10074 mRNA_1707: 10075 - BLAST related to SNF1-related protein kinase KIN10 [Melanop..., at 1,188 to 2,835 10075

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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215 + +0.5
220 - -1.2
234 + +0.1
254 - +0.9
283 + +1.0
304 + +0.2
322 + +2.3
324 + +1.3
427 + +0.5
453 + 10074 mRNA_1706 0.13 +1.3
465 - 10074 mRNA_1706 0.14 +1.5
482 + 10074 mRNA_1706 0.16 +0.2
493 - 10074 mRNA_1706 0.18 +1.1
647 + 10074 mRNA_1706 0.36 +0.6
683 - 10074 mRNA_1706 0.40 +1.6
809 + 10074 mRNA_1706 0.55 +2.7
842 - 10074 mRNA_1706 0.59 +0.9
844 + 10074 mRNA_1706 0.59 -0.6
848 - 10074 mRNA_1706 0.59 +2.0
902 + 10074 mRNA_1706 0.66 +1.7
949 - 10074 mRNA_1706 0.71 -0.2
949 - 10074 mRNA_1706 0.71 -1.2
950 + 10074 mRNA_1706 0.71 -0.1
974 - 10074 mRNA_1706 0.74 +0.2
1,016 + 10074 mRNA_1706 0.79 +0.5
1,065 + 10074 mRNA_1706 0.85 -1.6
1,118 + +1.9
1,142 + +1.8
1,155 + +1.2
1,272 - +0.8
1,281 + -0.2
1,573 + 10075 mRNA_1707 0.23 +1.8
1,625 + 10075 mRNA_1707 0.27 -0.1
1,625 + 10075 mRNA_1707 0.27 +2.0
1,628 + 10075 mRNA_1707 0.27 +0.5
1,646 + 10075 mRNA_1707 0.28 +1.8
1,649 - 10075 mRNA_1707 0.28 +0.5
1,680 + 10075 mRNA_1707 0.30 +0.4
1,781 + 10075 mRNA_1707 0.36 +1.2
1,926 + 10075 mRNA_1707 0.45 +0.5
1,996 + 10075 mRNA_1707 0.49 +0.5
2,005 - 10075 mRNA_1707 0.50 +0.6
2,010 - 10075 mRNA_1707 0.50 +0.8
2,033 + 10075 mRNA_1707 0.51 +1.2
2,068 + 10075 mRNA_1707 0.53 +2.0
2,076 + 10075 mRNA_1707 0.54 -2.0
2,209 - 10075 mRNA_1707 0.62 +0.5
2,352 + 10075 mRNA_1707 0.71 +1.3
2,449 - 10075 mRNA_1707 0.77 +1.0
2,472 - 10075 mRNA_1707 0.78 +0.5
2,475 + 10075 mRNA_1707 0.78 +1.4
2,501 + 10075 mRNA_1707 0.80 +1.0
2,923 + +2.2
3,038 - +0.5
3,062 + +0.3
3,198 - -0.0
3,200 + +1.7
3,208 + +1.0
3,333 + +0.3
3,347 - -1.7
3,348 - +1.3
3,381 + -0.6
3,459 + +2.3
3,634 - -2.8
3,791 + -0.4

Or see this region's nucleotide sequence