Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1714

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10081 and 10082 are separated by 326 nucleotides10082 and 10083 are separated by 545 nucleotides mRNA_1713: 10081 - KOG0022 Alcohol dehydrogenase, class III, at 13,985 to 15,656 10081 mRNA_1714: 10082 - K01372 BLMH, pepC bleomycin hydrolase, at 15,983 to 18,222 10082 mRNA_1715: 10083 - K18328 DBR1 lariat debranching enzyme, at 18,768 to 21,096 10083

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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15,035 - 10081 mRNA_1713 0.63 -0.8
15,147 + 10081 mRNA_1713 0.69 +1.4
15,168 - 10081 mRNA_1713 0.71 +0.9
15,195 - 10081 mRNA_1713 0.72 +1.0
15,332 - 10081 mRNA_1713 0.81 +1.0
15,394 + 10081 mRNA_1713 0.84 +0.8
15,422 - 10081 mRNA_1713 0.86 +0.6
15,438 + 10081 mRNA_1713 0.87 +2.7
15,528 + -0.3
15,531 - +1.3
15,579 + -4.2
15,588 - +0.6
15,708 - +0.2
15,756 - +1.3
15,831 - +0.2
15,850 - +0.4
15,852 - +0.9
15,853 - +1.7
15,856 - +1.1
15,858 + -0.7
15,860 - -0.8
15,861 + -0.5
15,879 + +1.3
15,887 - +0.9
15,889 - +1.4
15,897 + -1.5
15,897 + -0.6
16,049 + +2.8
16,192 - +2.1
16,253 - 10082 mRNA_1714 0.12 +2.0
16,353 + 10082 mRNA_1714 0.17 +0.2
16,433 - 10082 mRNA_1714 0.20 +1.0
16,475 - 10082 mRNA_1714 0.22 +0.5
16,614 + 10082 mRNA_1714 0.28 -0.0
16,658 - 10082 mRNA_1714 0.30 -0.2
16,767 - 10082 mRNA_1714 0.35 +0.1
16,771 - 10082 mRNA_1714 0.35 +0.5
16,771 - 10082 mRNA_1714 0.35 +1.0
16,802 + 10082 mRNA_1714 0.37 +0.2
16,845 - 10082 mRNA_1714 0.38 +1.7
16,849 + 10082 mRNA_1714 0.39 +1.9
16,853 - 10082 mRNA_1714 0.39 -0.2
16,868 + 10082 mRNA_1714 0.40 -0.8
16,918 - 10082 mRNA_1714 0.42 +0.1
16,945 + 10082 mRNA_1714 0.43 +1.0
16,989 - 10082 mRNA_1714 0.45 +0.4
17,060 + 10082 mRNA_1714 0.48 +0.1
17,189 - 10082 mRNA_1714 0.54 -0.6
17,379 + 10082 mRNA_1714 0.62 -0.2
17,442 - 10082 mRNA_1714 0.65 -1.9
17,473 - 10082 mRNA_1714 0.67 +0.6
17,609 - 10082 mRNA_1714 0.73 -0.3
17,631 - 10082 mRNA_1714 0.74 +2.1
17,661 + 10082 mRNA_1714 0.75 -0.9
17,781 - 10082 mRNA_1714 0.80 +0.5
18,016 + +0.5
18,044 - +0.8
18,074 + +0.3
18,224 + -0.2
18,235 + -0.2
18,309 + +2.1
18,473 + -0.3
18,600 + -0.2
18,608 + -2.5
18,621 + -0.0
18,775 + +0.3
18,959 - +1.7

Or see this region's nucleotide sequence