Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1725

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10093 and 10094 are separated by 509 nucleotides mRNA_1725: 10093 - KOG2343 Glucose-repressible protein and related proteins, at 46,697 to 49,542 10093 mRNA_1726: 10094 - BLAST Protein priA [Grifola frondosa], at 50,052 to 51,969 10094

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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46,215 - -1.3
46,337 - -0.3
46,352 + -1.8
46,483 + -0.7
46,494 + +0.9
46,496 - +0.6
46,503 + -0.3
46,568 + +0.6
46,657 - +2.8
46,783 + +1.7
46,789 + +1.2
46,803 + +2.3
46,812 - +2.0
46,813 + +0.2
46,833 - -0.5
46,874 - +1.8
46,888 - +1.5
46,895 + +0.3
46,898 - +1.8
46,925 - +0.5
46,939 - +1.8
47,113 + 10093 mRNA_1725 0.15 +1.3
47,200 - 10093 mRNA_1725 0.18 +1.1
47,412 + 10093 mRNA_1725 0.25 +1.1
47,548 + 10093 mRNA_1725 0.30 -0.3
47,682 + 10093 mRNA_1725 0.35 +1.3
47,695 - 10093 mRNA_1725 0.35 -0.1
47,703 - 10093 mRNA_1725 0.35 +2.9
47,731 + 10093 mRNA_1725 0.36 +1.6
47,832 + 10093 mRNA_1725 0.40 +1.1
48,061 - 10093 mRNA_1725 0.48 +1.4
48,202 - 10093 mRNA_1725 0.53 +0.5
48,204 - 10093 mRNA_1725 0.53 +1.9
48,225 + 10093 mRNA_1725 0.54 +0.6
48,367 + 10093 mRNA_1725 0.59 +1.6
48,389 - 10093 mRNA_1725 0.59 +2.3
48,430 + 10093 mRNA_1725 0.61 -0.2
48,440 - 10093 mRNA_1725 0.61 +0.9
48,446 + 10093 mRNA_1725 0.61 +2.7
48,446 + 10093 mRNA_1725 0.61 +2.5
48,532 - 10093 mRNA_1725 0.64 +1.5
48,535 + 10093 mRNA_1725 0.65 +1.3
48,562 - 10093 mRNA_1725 0.66 +1.9
48,573 + 10093 mRNA_1725 0.66 +1.8
48,808 - 10093 mRNA_1725 0.74 +2.5
48,878 - 10093 mRNA_1725 0.77 +1.1
48,944 - 10093 mRNA_1725 0.79 +1.3
49,016 + 10093 mRNA_1725 0.81 +0.6
49,111 + 10093 mRNA_1725 0.85 +2.0
49,429 + +0.3
49,516 - -0.6
49,581 + +0.7
49,653 + +0.0
49,738 - +2.2
49,995 + +0.8
49,999 - +1.1
50,094 + +2.9
50,176 + +0.8
50,523 - 10094 mRNA_1726 0.25 -0.4

Or see this region's nucleotide sequence