Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1734

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10101 and 10102 are separated by 988 nucleotides10102 and 10103 are separated by 963 nucleotides mRNA_1733: 10101 - KOG1021 Acetylglucosaminyltransferase EXT1/exostosin 1, at 65,153 to 66,958 10101 mRNA_1734: 10102 - KOG1721 FOG Zn-finger, at 67,947 to 72,087 10102 mRNA_1735: 10103 - K03235 EF3, TEF3 elongation factor 3, at 73,051 to 76,843 10103

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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67,020 - -0.2
67,043 - -0.1
67,152 - -1.0
67,162 - +0.1
67,213 - +0.3
67,320 + +0.7
67,320 - +0.6
67,321 - -0.4
67,399 - +1.2
67,464 - +1.2
67,470 + +0.1
67,477 - -0.5
67,543 - -1.3
67,543 - +0.6
67,594 - -1.9
67,638 + +1.0
67,670 - -0.8
67,671 - +3.1
67,709 - -0.8
67,848 + +0.1
67,858 + -0.7
67,900 - +0.3
68,029 + -1.3
68,460 - 10102 mRNA_1734 0.12 +2.8
68,591 - 10102 mRNA_1734 0.16 +1.0
69,006 + 10102 mRNA_1734 0.26 -2.0
69,169 + 10102 mRNA_1734 0.30 -1.0
69,443 - 10102 mRNA_1734 0.36 -1.2
69,464 + 10102 mRNA_1734 0.37 -0.3
69,742 - 10102 mRNA_1734 0.43 +0.6
69,867 + 10102 mRNA_1734 0.46 -0.8
69,875 - 10102 mRNA_1734 0.47 -0.4
69,885 + 10102 mRNA_1734 0.47 -0.6
70,023 - 10102 mRNA_1734 0.50 -1.0
70,040 + 10102 mRNA_1734 0.51 -0.4
70,042 - 10102 mRNA_1734 0.51 -0.5
70,042 - 10102 mRNA_1734 0.51 -1.1
70,047 - 10102 mRNA_1734 0.51 +1.2
70,049 + 10102 mRNA_1734 0.51 -1.9
70,051 + 10102 mRNA_1734 0.51 -1.1
70,052 - 10102 mRNA_1734 0.51 +0.7
70,056 - 10102 mRNA_1734 0.51 -0.4
70,056 - 10102 mRNA_1734 0.51 -0.2
70,093 - 10102 mRNA_1734 0.52 -0.7
70,232 + 10102 mRNA_1734 0.55 +0.1
70,349 + 10102 mRNA_1734 0.58 +0.0
70,364 - 10102 mRNA_1734 0.58 -1.7
70,370 - 10102 mRNA_1734 0.59 +0.2
70,371 + 10102 mRNA_1734 0.59 -0.4
70,382 - 10102 mRNA_1734 0.59 -1.1
70,382 - 10102 mRNA_1734 0.59 -0.2
70,382 + 10102 mRNA_1734 0.59 +2.7
70,389 + 10102 mRNA_1734 0.59 +0.4
70,556 + 10102 mRNA_1734 0.63 -1.0
70,557 - 10102 mRNA_1734 0.63 -3.2
70,562 - 10102 mRNA_1734 0.63 -0.4
70,577 - 10102 mRNA_1734 0.64 -1.6
70,582 + 10102 mRNA_1734 0.64 +0.2
70,614 - 10102 mRNA_1734 0.64 -0.8
70,634 + 10102 mRNA_1734 0.65 -0.8
70,646 + 10102 mRNA_1734 0.65 -0.1
70,663 + 10102 mRNA_1734 0.66 +0.9
70,672 - 10102 mRNA_1734 0.66 +1.6
70,673 - 10102 mRNA_1734 0.66 +1.2
70,677 - 10102 mRNA_1734 0.66 +0.4
70,677 - 10102 mRNA_1734 0.66 +0.1
70,680 - 10102 mRNA_1734 0.66 +0.5
70,690 + 10102 mRNA_1734 0.66 +0.8
70,750 + 10102 mRNA_1734 0.68 -2.1
70,767 - 10102 mRNA_1734 0.68 +3.5
70,820 - 10102 mRNA_1734 0.69 -0.1
70,979 + 10102 mRNA_1734 0.73 +0.2
72,165 + -1.2
72,196 - -0.2
72,213 + +0.5
72,285 - -0.1
72,774 + +0.3
72,827 + -0.5
72,899 - +1.1

Or see this region's nucleotide sequence