Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1736

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10104 and 10105 are separated by 275 nucleotides mRNA_1736: 10104 - K01593 DDC aromatic-L-amino-acid decarboxylase, at 78,147 to 80,608 10104 mRNA_1737: 10105 - KOG1021 Acetylglucosaminyltransferase EXT1/exostosin 1, at 80,884 to 82,688 10105

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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77,176 - -0.9
77,221 - +0.3
77,224 - +0.1
77,234 + -0.4
77,241 + +0.6
77,242 + +0.8
77,251 + +0.7
77,251 + +1.7
77,256 + +0.9
77,260 - +2.9
77,261 + +0.8
77,262 + -0.8
77,262 - +0.4
77,291 + -1.8
77,294 - -2.1
77,295 - -1.3
77,324 + +0.7
77,334 - +1.2
77,339 - +1.5
77,345 - +0.4
77,350 - +0.4
77,350 + +0.8
77,351 + +0.9
77,353 + -0.2
77,360 + +0.2
77,373 - +1.0
77,374 - -0.1
77,386 + -0.5
77,394 - +0.3
77,396 + -0.3
77,399 - +2.0
77,400 + +0.1
77,400 + +0.1
77,407 + +0.9
77,412 - +1.2
77,421 + -0.3
77,422 + +1.1
77,425 + -0.9
77,427 + +0.2
77,427 + -0.3
77,434 + -0.6
77,717 + -0.5
77,722 + +1.3
77,976 - -1.4
78,120 - -0.2
78,287 - +2.3
78,617 + 10104 mRNA_1736 0.19 +0.8
78,775 - 10104 mRNA_1736 0.26 +2.2
78,889 - 10104 mRNA_1736 0.30 +1.0
78,898 - 10104 mRNA_1736 0.31 -0.9
78,927 - 10104 mRNA_1736 0.32 +1.0
79,189 + 10104 mRNA_1736 0.42 -0.0
79,335 + 10104 mRNA_1736 0.48 -0.7
79,343 - 10104 mRNA_1736 0.49 +0.3
79,374 - 10104 mRNA_1736 0.50 +1.8
79,382 + 10104 mRNA_1736 0.50 -0.5
79,606 - 10104 mRNA_1736 0.59 -1.9
80,622 - -1.0
80,625 - +1.8
80,669 - +0.0
80,789 + -0.8
80,790 - -0.2
80,795 - +0.0
80,803 - +0.1
80,842 + +0.1
80,970 + -2.7
81,115 + 10105 mRNA_1737 0.13 -0.8
81,237 - 10105 mRNA_1737 0.20 -0.2
81,252 + 10105 mRNA_1737 0.20 +0.3
81,257 + 10105 mRNA_1737 0.21 -0.6
81,292 + 10105 mRNA_1737 0.23 -1.4

Or see this region's nucleotide sequence