Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1806

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10173 and 10174 are separated by 589 nucleotides mRNA_1805: 10173 - K00616 E2.2.1.2, talA, talB transaldolase, at 244,188 to 245,888 10173 mRNA_1806: 10174 - BLAST related to C2H2 zinc finger protein [Ustilago hordei], at 246,478 to 247,533 10174

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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245,950 - -1.5
246,034 + -3.0
246,063 - -1.5
246,068 - +0.6
246,069 + +1.4
246,092 + +1.8
246,094 + -2.0
246,094 + +0.3
246,097 - -0.0
246,098 + +0.2
246,101 - +0.3
246,103 + -0.5
246,110 + +1.4
246,228 + -0.8
246,379 - -1.0
246,396 + +0.7
246,522 - -0.2
246,644 - 10174 mRNA_1806 0.16 +1.9
247,013 - 10174 mRNA_1806 0.51 +0.9
247,151 - 10174 mRNA_1806 0.64 +1.6
247,276 + 10174 mRNA_1806 0.76 +1.8
247,426 + 10174 mRNA_1806 0.90 +0.8
247,552 - +2.7
247,891 - +1.1
248,000 + -0.2
248,260 + -0.0
248,499 - +1.5

Or see this region's nucleotide sequence