Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1826

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10193 and 10194 are separated by 224 nucleotides mRNA_1825: 10193 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 304,648 to 308,455 10193 mRNA_1826: 10194 - Hypothetical Protein, at 308,680 to 309,068 10194

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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307,760 + 10193 mRNA_1825 0.82 -1.9
307,792 + 10193 mRNA_1825 0.83 -2.4
308,037 - 10193 mRNA_1825 0.89 -2.6
308,507 - +0.4
308,633 + -0.5
308,647 + -0.1
308,654 - -0.3
308,777 - 10194 mRNA_1826 0.25 -0.0
308,780 - 10194 mRNA_1826 0.26 -0.2
308,789 + 10194 mRNA_1826 0.28 +0.2
308,847 + 10194 mRNA_1826 0.43 +0.5
308,991 - 10194 mRNA_1826 0.80 -1.8

Or see this region's nucleotide sequence