Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1859

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10226 and 10227 are separated by 248 nucleotides10227 and 10228 are separated by 271 nucleotides mRNA_1858: 10226 - K19245 JLP1 sulfonate dioxygenase, at 387,260 to 388,608 10226 mRNA_1859: 10227 - SUPERFAMILY--SSF57997, at 388,857 to 391,098 10227 mRNA_1860: 10228 - K02259 COX15 cytochrome c oxidase assembly protein subunit 15, at 391,370 to 393,300 10228

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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388,434 + 10226 mRNA_1858 0.87 -0.2
388,803 - -1.3
389,110 - 10227 mRNA_1859 0.11 -0.6
389,157 + 10227 mRNA_1859 0.13 -0.4
389,281 - 10227 mRNA_1859 0.19 +0.9
389,515 - 10227 mRNA_1859 0.29 +1.0
389,674 - 10227 mRNA_1859 0.36 -0.3
390,759 + 10227 mRNA_1859 0.85 +1.3
390,796 + 10227 mRNA_1859 0.86 +1.3

Or see this region's nucleotide sequence