Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1862

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10229 and 10230 are separated by 423 nucleotides10230 and 10231 are separated by 133 nucleotides mRNA_1861: 10229 - KOG3348 BolA (bacterial stress-induced morphogen)-related protein, at 393,442 to 393,978 10229 mRNA_1862: 10230 - Interpro DNA replication factor Cdt1 C-terminal domain 0, at 394,402 to 396,759 10230 mRNA_1863: 10231 - HMMPfam-Metallo-beta-lactamase superfamily-PF00753,SMART-Metallo-beta-lactamase superfamily-SM00849,SUPERFAMILY--SSF56281, at 396,893 to 397,973 10231

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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394,285 + +0.3
394,285 + +1.1
394,300 - -1.0
394,305 + +0.8
394,413 - +1.6
394,590 + -0.9
394,745 + 10230 mRNA_1862 0.15 -0.4
395,328 + 10230 mRNA_1862 0.39 -0.2
395,460 + 10230 mRNA_1862 0.45 +0.0
395,464 - 10230 mRNA_1862 0.45 -0.8
395,600 + 10230 mRNA_1862 0.51 +0.0
396,060 + 10230 mRNA_1862 0.70 -0.2
396,357 + 10230 mRNA_1862 0.83 +1.0
396,484 - 10230 mRNA_1862 0.88 +0.9
396,486 - 10230 mRNA_1862 0.88 +1.0
396,884 + -0.0
397,065 - 10231 mRNA_1863 0.16 -0.1
397,065 - 10231 mRNA_1863 0.16 -0.8
397,333 + 10231 mRNA_1863 0.41 -0.2
397,370 - 10231 mRNA_1863 0.44 -0.6
397,669 + 10231 mRNA_1863 0.72 +0.5

Or see this region's nucleotide sequence