Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1865

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10232 and 10233 are separated by 214 nucleotides10233 and 10234 are separated by 162 nucleotides mRNA_1864: 10232 - SUPERFAMILY--SSF53300, at 398,356 to 399,523 10232 mRNA_1865: 10233 - K02729 PSMA5 20S proteasome subunit alpha 5, at 399,738 to 401,124 10233 mRNA_1866: 10234 - KOG4455 Uncharacterized conserved protein, at 401,287 to 402,071 10234

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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399,619 + +0.4
399,626 + -0.2
399,631 + +0.7
399,697 - -0.2
401,202 + +0.5
401,232 - -0.4
401,241 - -0.1
401,241 - +0.7
401,381 - 10234 mRNA_1866 0.12 -0.1
401,393 - 10234 mRNA_1866 0.14 +0.3
401,515 + 10234 mRNA_1866 0.29 +1.5
401,660 - 10234 mRNA_1866 0.48 -2.8
401,706 + 10234 mRNA_1866 0.53 +0.7
401,972 + 10234 mRNA_1866 0.87 -1.0
401,993 + -0.3
402,104 - -1.2

Or see this region's nucleotide sequence