Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1868

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10235 and 10236 are separated by 123 nucleotides10236 and 10237 are separated by 386 nucleotides mRNA_1867: 10235 - HMMPfam-von Willebrand factor type A domain-PF00092,ProSiteProfiles-VWFA domain profile.-PS50234,SMART-von Willebrand factor (vWF) type A domain-SM00327,SUPERFAMILY--SSF53300, at 402,517 to 403,659 10235 mRNA_1868: 10236 - K11569 DAD4, HSK2 DASH complex subunit DAD4, at 403,783 to 404,255 10236 mRNA_1869: 10237 - K14570 REX1, REXO1, RNH70 RNA exonuclease 1, at 404,642 to 406,231 10237

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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402,868 + 10235 mRNA_1867 0.31 +0.4
403,163 + 10235 mRNA_1867 0.57 +0.3
403,313 - 10235 mRNA_1867 0.70 -1.5
403,554 + +0.2
404,320 - -0.4
405,041 - 10237 mRNA_1869 0.25 +0.2
405,205 - 10237 mRNA_1869 0.35 +0.1

Or see this region's nucleotide sequence