Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1872

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10239 and 10240 are separated by 242 nucleotides10240 and 10241 are separated by 213 nucleotides mRNA_1871: 10239 - K14855 RSA4, NLE1 ribosome assembly protein 4, at 407,656 to 409,995 10239 mRNA_1872: 10240 - K14566 UTP24, FCF1 U3 small nucleolar RNA-associated protein 24, at 410,238 to 411,340 10240 mRNA_1873: 10241 - BLAST Rab geranylgeranyltransferase [Mycena chlorophos], at 411,554 to 414,002 10241

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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410,061 - -1.0
410,088 - -0.2
410,101 - -0.3
410,239 - +0.4
411,371 - +1.2
411,373 + -0.3
411,379 + +1.1
411,390 + +1.0
411,393 + -0.6
411,401 - +0.5
411,415 + -1.0
411,452 + -0.1
411,453 + -1.5
411,572 + +0.2
411,604 + +1.7
411,764 + +3.3
411,764 + +2.2
411,858 + 10241 mRNA_1873 0.12 +1.3
411,898 + 10241 mRNA_1873 0.14 +0.0

Or see this region's nucleotide sequence