Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1875

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10242 and 10243 are separated by 276 nucleotides10243 and 10244 are separated by 130 nucleotides mRNA_1874: 10242 - BLAST midasin [Pseudozyma hubeiensis SY62], at 414,154 to 415,207 10242 mRNA_1875: 10243 - Hypothetical Protein, at 415,484 to 416,261 10243 mRNA_1876: 10244 - Hypothetical Protein, at 416,392 to 418,180 10244

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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414,524 + 10242 mRNA_1874 0.35 +1.4
414,555 - 10242 mRNA_1874 0.38 -0.5
414,705 - 10242 mRNA_1874 0.52 -0.4
414,834 - 10242 mRNA_1874 0.65 -1.5
414,841 + 10242 mRNA_1874 0.65 +1.3
414,977 - 10242 mRNA_1874 0.78 -0.0
415,721 + 10243 mRNA_1875 0.30 -0.7
416,426 + -0.8

Or see this region's nucleotide sequence