Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1886

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10253 and 10254 are separated by 447 nucleotides10254 and 10255 are separated by 549 nucleotides mRNA_1885: 10253 - KOG1238 Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family), at 433,544 to 436,141 10253 mRNA_1886: 10254 - KOG1470 Phosphatidylinositol transfer protein PDR16 and related proteins, at 436,589 to 438,730 10254 mRNA_1887: 10255 - K14823 EBP2, EBNA1BP2 rRNA-processing protein EBP2, at 439,280 to 440,428 10255

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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435,864 - 10253 mRNA_1885 0.89 -0.5
436,025 - -1.4
436,135 - -1.5
436,142 + +2.2
436,146 + -0.9
436,148 - +1.5
436,172 - -2.0
436,300 + -0.2
436,306 - +1.1
436,323 + +1.0
436,330 - +0.3
436,343 + -1.2
436,347 + +0.8
436,367 - +0.3
436,476 - +2.4
436,508 + -1.1
436,598 - -0.3
436,632 - +0.6
436,969 + 10254 mRNA_1886 0.18 +0.2
437,348 - 10254 mRNA_1886 0.35 +0.2
438,083 + 10254 mRNA_1886 0.70 +0.2
438,085 - 10254 mRNA_1886 0.70 +0.4
438,096 - 10254 mRNA_1886 0.70 +2.0
438,229 - 10254 mRNA_1886 0.77 -1.3
438,391 + 10254 mRNA_1886 0.84 +0.7
438,827 + +0.6
438,853 - +0.3
438,945 - -1.1
438,971 - -0.6
439,008 + +1.1
439,029 + +1.1
439,119 - +0.2
439,129 + +0.3
439,130 - +1.8
439,140 - +0.1
439,144 - -1.0
439,159 - -0.3
439,160 - -1.6
439,164 + +3.4
439,169 + -0.5
439,184 - +0.2
439,315 + -2.2

Or see this region's nucleotide sequence