Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1891

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10258 and 10259 are separated by 594 nucleotides10259 and 10260 are separated by 596 nucleotides mRNA_1890: 10258 - Hypothetical Protein, at 442,391 to 442,819 10258 mRNA_1891: 10259 - K03083 GSK3B glycogen synthase kinase 3 beta, at 443,414 to 444,929 10259 mRNA_1892: 10260 - K15743 CES3_5 carboxylesterase 3/5, at 445,526 to 447,987 10260

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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442,427 - +1.8
442,431 - +1.0
442,444 - 10258 mRNA_1890 0.12 -0.6
442,460 - 10258 mRNA_1890 0.16 +0.3
442,466 + 10258 mRNA_1890 0.17 +0.7
442,553 + 10258 mRNA_1890 0.38 -1.6
442,605 - 10258 mRNA_1890 0.50 +0.3
442,623 + 10258 mRNA_1890 0.54 +0.5
442,763 + 10258 mRNA_1890 0.87 -3.4
442,919 - -1.3
442,927 + -2.0
442,927 + -4.0
442,946 + -2.0
442,947 + -2.4
443,113 + -1.2
443,225 - -4.1
443,849 - 10259 mRNA_1891 0.29 -2.2
444,256 - 10259 mRNA_1891 0.56 -2.3
444,457 - 10259 mRNA_1891 0.69 -1.1
444,573 + 10259 mRNA_1891 0.76 -1.3
444,907 - -1.4
445,177 - -0.9
445,187 + +1.4
445,399 - +0.4
445,455 + -0.8

Or see this region's nucleotide sequence