Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1905

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10272 and 10273 are separated by 205 nucleotides mRNA_1904: 10272 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 479,057 to 480,594 10272 mRNA_1905: 10273 - Hypothetical Protein, at 480,800 to 481,665 10273

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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479,861 + 10272 mRNA_1904 0.52 +0.4
480,169 + 10272 mRNA_1904 0.72 +0.7
480,416 + 10272 mRNA_1904 0.88 +0.4
480,691 - +1.6
480,696 + +1.5
480,706 + -0.2
480,715 + -0.4
480,723 + -0.2
480,820 + -0.9
480,831 - -0.3
480,841 + +0.0
480,841 + -1.1
480,857 + +0.6
480,905 + 10273 mRNA_1905 0.12 -1.5
480,930 - 10273 mRNA_1905 0.15 +0.6
480,938 + 10273 mRNA_1905 0.16 -0.1
480,976 + 10273 mRNA_1905 0.20 +0.3
480,982 - 10273 mRNA_1905 0.21 +0.8
480,997 + 10273 mRNA_1905 0.23 +0.4
481,054 + 10273 mRNA_1905 0.29 -0.3
481,093 + 10273 mRNA_1905 0.34 -0.4
481,106 + 10273 mRNA_1905 0.35 +2.2
481,107 - 10273 mRNA_1905 0.35 -1.2
481,113 + 10273 mRNA_1905 0.36 +1.0
481,114 + 10273 mRNA_1905 0.36 +0.0
481,129 - 10273 mRNA_1905 0.38 +0.6
481,132 + 10273 mRNA_1905 0.38 +0.5
481,135 + 10273 mRNA_1905 0.39 +0.2
481,135 + 10273 mRNA_1905 0.39 -1.1
481,158 + 10273 mRNA_1905 0.41 +0.3
481,170 - 10273 mRNA_1905 0.43 -0.6
481,190 + 10273 mRNA_1905 0.45 +0.4
481,202 + 10273 mRNA_1905 0.46 +1.9
481,213 + 10273 mRNA_1905 0.48 +0.5
481,220 + 10273 mRNA_1905 0.48 -1.4
481,235 - 10273 mRNA_1905 0.50 -0.6
481,236 + 10273 mRNA_1905 0.50 +0.8
481,244 + 10273 mRNA_1905 0.51 -0.1
481,314 - 10273 mRNA_1905 0.59 +1.0
481,315 + 10273 mRNA_1905 0.59 -0.6
481,334 + 10273 mRNA_1905 0.62 +0.9
481,378 - 10273 mRNA_1905 0.67 +1.3
481,384 + 10273 mRNA_1905 0.67 +0.3
481,399 - 10273 mRNA_1905 0.69 +0.3
481,403 - 10273 mRNA_1905 0.70 -1.0
481,425 - 10273 mRNA_1905 0.72 +2.7
481,432 + 10273 mRNA_1905 0.73 -1.3
481,439 + 10273 mRNA_1905 0.74 -0.8
481,453 - 10273 mRNA_1905 0.75 -0.1
481,454 + 10273 mRNA_1905 0.76 -0.4
481,455 - 10273 mRNA_1905 0.76 -2.2
481,458 + 10273 mRNA_1905 0.76 +0.8
481,465 - 10273 mRNA_1905 0.77 -2.7
481,468 + 10273 mRNA_1905 0.77 -0.4
481,469 + 10273 mRNA_1905 0.77 -0.3
481,485 + 10273 mRNA_1905 0.79 -0.5
481,489 - 10273 mRNA_1905 0.80 -3.1
481,501 - 10273 mRNA_1905 0.81 -0.5
481,536 + 10273 mRNA_1905 0.85 -1.0
481,549 - 10273 mRNA_1905 0.86 +2.0
481,609 + +1.4
481,613 + +0.4
481,620 + +0.0
481,631 - -0.0
481,636 + +0.5
481,646 + +0.5
481,662 + +1.5
481,679 + +0.2
481,695 + -0.7
481,697 + +0.4
481,719 - +0.6
481,733 - +1.6
481,770 + -0.6
481,772 + +0.5
481,816 + +0.5
481,816 + -0.8
481,819 + +0.7
481,826 - +1.6
481,829 + +0.1
481,830 - +0.1
481,832 - +0.9
481,842 - -0.9
481,853 + +1.2
481,857 - -0.2
481,859 + -2.2
481,864 - +1.3
481,866 - -0.1
481,867 + +0.4
481,867 - -1.1
481,869 + -0.7
481,869 - +0.1
481,870 - +1.2
481,873 - -0.4
481,880 + +0.4
481,881 + -0.1
481,882 + +3.5
481,890 - +0.1
481,890 + +1.2
481,893 + +1.4
481,895 - -0.0
481,896 + +0.9
481,897 - +0.6
481,897 + -0.4
481,897 + +0.2
481,898 + +0.1
481,898 + -1.2
481,900 + +1.6
481,903 - -0.7
481,904 - -0.1
481,905 - -1.3
481,909 + +0.3
481,909 + -0.7
481,910 + -0.5
481,915 + -0.3
481,916 + -0.1
481,918 + -0.4
481,920 + -1.3
481,920 - -2.0
481,921 + -0.5
481,926 + -2.7
481,948 + +0.2
481,950 - -1.4
481,952 + -2.0
481,990 - +0.1
482,010 - +0.1
482,010 - -0.5
482,037 - -1.1
482,141 + -0.2
482,152 - +0.3
482,167 + -0.9
482,173 + +0.6
482,180 - +0.9
482,220 - -1.1
482,221 + +0.2
482,222 - -2.5
482,235 + +0.7
482,375 + -0.5
482,379 + -0.3
482,382 + -1.5
482,386 - +0.8
482,387 - +1.1
482,391 + +0.8
482,395 - -0.1
482,397 + -0.7
482,418 - -0.8
482,435 + -0.3
482,435 + -1.9
482,439 + +1.0
482,442 - -0.9
482,443 + -0.4
482,444 - +2.4
482,445 - -0.8
482,445 + +0.2
482,446 + +1.2
482,447 - +1.7
482,449 + +0.5
482,450 + +1.0
482,451 - +0.4
482,451 - +2.1
482,456 - +1.8
482,458 - +0.2
482,461 - -0.1
482,464 + -0.1
482,464 + +1.2
482,471 + -0.2
482,472 - +0.0
482,473 + -0.2
482,474 - +0.9
482,474 + -1.9
482,475 + -0.1
482,481 - +0.6
482,483 - +0.6
482,484 + +0.2
482,485 - +1.8
482,490 - +0.3
482,490 - +2.0
482,492 + +1.1
482,494 - +1.3
482,494 - -0.1
482,495 - +0.5
482,495 - -0.1
482,507 - +0.1
482,509 + +1.2
482,524 - +3.1
482,635 - +0.9
482,653 - +0.6
482,654 - -1.5
482,659 - +1.1

Or see this region's nucleotide sequence