Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1917

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10284 and 10285 are separated by 301 nucleotides mRNA_1916: 10284 - HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Domain of unknown function (DUF3425)-PF11905,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 508,004 to 509,890 10284 mRNA_1917: 10285 - K04488 iscU, nifU nitrogen fixation protein NifU and related proteins, at 510,192 to 511,246 10285

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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509,354 + 10284 mRNA_1916 0.72 -0.6
509,488 - 10284 mRNA_1916 0.79 -1.8
509,628 - 10284 mRNA_1916 0.86 -1.2
509,771 - -0.3
509,890 - -0.7
509,930 - -0.3
510,245 + +1.4
511,266 - -1.4
511,267 + -2.8
511,299 + +1.4
511,299 + -0.2
511,304 - +0.5
511,308 - +0.2
511,312 + +0.1
511,317 - -1.2
511,447 - +1.4
511,451 + -1.3
511,466 - -0.3
511,606 - +2.0
511,735 - +0.5
511,882 - +2.4
511,895 + -2.9
511,896 + +0.4
512,045 + -0.0
512,070 - -1.1

Or see this region's nucleotide sequence