Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1927

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10294 and 10295 are separated by 572 nucleotides mRNA_1926: 10294 - HMMPfam-GDSL-like Lipase/Acylhydrolase family-PF13472,SUPERFAMILY--SSF52266, at 525,365 to 527,827 10294 mRNA_1927: 10295 - K19691 NIK1, TCSC osomolarity two-component system, sensor histidine kinase NIK1, at 528,400 to 533,209 10295

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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527,414 + 10294 mRNA_1926 0.83 -0.0
527,439 + 10294 mRNA_1926 0.84 +1.3
527,441 - 10294 mRNA_1926 0.84 +0.5
527,463 + 10294 mRNA_1926 0.85 -0.3
527,611 - +0.2
527,732 + +0.3
527,735 - +0.5
527,742 + +0.7
527,838 - +1.5
527,851 - -0.4
527,865 - -1.3
527,869 - +0.3
527,889 - +0.9
527,894 + +0.9
527,942 - -0.5
527,945 - -0.3
528,044 - -1.4
528,070 - +0.3
528,086 + +0.3
528,349 - -2.4
528,500 + +0.1
528,597 + -0.3
528,642 - +1.9
528,903 - 10295 mRNA_1927 0.10 +0.5
528,935 + 10295 mRNA_1927 0.11 +1.5
529,048 + 10295 mRNA_1927 0.13 +0.1
529,945 - 10295 mRNA_1927 0.32 -0.6
529,953 + 10295 mRNA_1927 0.32 -0.6
529,962 - 10295 mRNA_1927 0.32 +1.7
530,126 - 10295 mRNA_1927 0.36 +2.6
530,199 - 10295 mRNA_1927 0.37 -1.4
530,266 + 10295 mRNA_1927 0.39 +1.4
530,377 + 10295 mRNA_1927 0.41 +0.1
530,511 - 10295 mRNA_1927 0.44 +2.3
530,661 + 10295 mRNA_1927 0.47 +1.0
530,804 - 10295 mRNA_1927 0.50 +0.6
530,848 + 10295 mRNA_1927 0.51 +0.6
531,254 - 10295 mRNA_1927 0.59 +0.2
531,465 + 10295 mRNA_1927 0.64 -0.5
531,554 - 10295 mRNA_1927 0.66 +0.0
531,582 + 10295 mRNA_1927 0.66 -0.5
531,814 - 10295 mRNA_1927 0.71 -0.2
532,420 + 10295 mRNA_1927 0.84 +0.2
532,541 - 10295 mRNA_1927 0.86 +1.9
532,542 - 10295 mRNA_1927 0.86 -0.0
532,547 + 10295 mRNA_1927 0.86 +1.2
532,838 - +0.8
532,854 + -0.2
532,857 + -0.4
532,980 + +0.7
533,002 - +0.7
533,011 + +1.1
533,013 + -0.6
533,015 - +0.9
533,017 - +1.2
533,138 + +1.0
533,154 - +0.6
533,160 - +0.0
533,173 - -0.3
533,294 + +1.6
533,297 + -1.0
533,299 - +0.3
533,316 - +2.3
533,346 - -0.9
533,439 - +1.0
533,449 - -0.5
533,452 - -0.9
533,460 - -1.3
533,465 + +1.2
533,467 - +0.8
533,471 - -0.2
533,476 - +0.0
533,479 - +1.3
533,577 + -0.1
533,582 - -0.8
533,586 - -0.9
533,590 + -0.0
533,591 + +1.8
533,600 - +0.8
533,615 - +0.8
533,617 - -0.7
533,619 + -1.1
533,621 + -0.5
533,621 + +0.3
533,624 + -0.6
533,628 + -0.8
533,650 - +1.3
533,665 - +0.9
533,671 - +2.2
533,675 + -0.8
533,677 + -0.0
533,677 - +0.4
533,677 - -0.1
533,678 - -0.2
533,680 + +0.0
533,682 - +1.2
533,687 + -1.0
533,696 - -0.0
533,699 - +0.5
533,700 + -0.5
533,701 + +0.2
533,704 + -0.2
533,705 - +0.4
533,717 - +0.3
533,721 - -3.8
533,721 + -0.7
533,722 + +1.2
533,722 + +0.5
533,765 + -0.3
533,783 + -1.5
533,792 + -0.1
533,793 - +0.2
533,814 + -1.9
533,816 - +0.4
533,822 + +1.6
533,828 - +0.8
533,843 + +1.3
533,844 - +1.5
533,855 + -0.6
533,863 + +1.3
533,864 - +0.5
533,868 + -0.8
533,879 + -0.9
533,880 - +0.5
533,892 + +0.7
533,897 + -0.7
533,897 + +0.1
533,899 + -0.1
533,903 + -0.3
533,904 + +1.1
533,905 + -0.3
533,927 - +1.3
533,931 + +1.7
533,936 + +0.4
533,938 + +1.0
533,941 + +0.5
533,957 + +0.3
534,017 - +0.2
534,017 - +0.8
534,033 + +0.3
534,047 + +1.1
534,049 - +0.5
534,053 - +0.6
534,056 + +0.8
534,057 + +2.4
534,062 - +0.5
534,063 + +0.7
534,066 + -0.6
534,069 + -0.9
534,072 + -0.4
534,075 - +0.5
534,077 - +1.6
534,077 - +1.4
534,081 + +0.4
534,086 - +1.7
534,088 - +1.2
534,091 + +0.8
534,093 - +0.9
534,095 - +1.2
534,096 + +2.8
534,101 + -2.1
534,110 + +0.4

Or see this region's nucleotide sequence