Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1949

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10316 and 10317 are separated by 491 nucleotides mRNA_1948: 10316 - K08176 PHO84 MFS transporter, PHS family, inorganic phosphate transporter, at 580,409 to 582,858 10316 mRNA_1949: 10317 - KOG0254 Predicted transporter (major facilitator superfamily), at 583,350 to 585,589 10317

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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582,858 + -2.2
582,866 + -0.4
582,871 - -1.9
582,882 + +1.8
583,075 + -0.2
583,127 - +1.5
583,402 + -0.3
583,847 + 10317 mRNA_1949 0.22 -2.0
584,446 - 10317 mRNA_1949 0.49 +0.4
585,015 + 10317 mRNA_1949 0.74 -0.3
585,282 + 10317 mRNA_1949 0.86 +1.7
585,282 + 10317 mRNA_1949 0.86 +0.4
585,283 - 10317 mRNA_1949 0.86 -1.4
585,297 - 10317 mRNA_1949 0.87 +1.2
585,426 - +0.1
585,427 + -1.1
585,436 - +1.8
585,450 + -0.0
585,455 - -0.1
585,460 + -0.2
585,469 + -0.4
585,584 - -0.6
585,595 - +0.5
585,599 - -1.0
585,729 - -0.1
585,737 - -0.3
585,947 + -0.6
586,188 - -0.4

Or see this region's nucleotide sequence