Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1951

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10318 and 10319 are separated by 506 nucleotides10319 and 10320 are separated by 377 nucleotides mRNA_1950: 10318 - K03965 NDUFB9 NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 9, at 586,825 to 587,644 10318 mRNA_1951: 10319 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 588,151 to 591,426 10319 mRNA_1952: 10320 - K14564 NOP56 nucleolar protein 56, at 591,804 to 593,975 10320

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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587,720 + -0.5
587,720 + -0.4
587,775 - +0.2
587,790 - +2.2
587,943 + -0.5
587,948 + +1.1
587,951 - +0.8
587,960 - +0.2
587,983 - -1.1
587,994 - +0.4
588,067 - +0.1
588,115 + -1.9
588,283 - +1.2
589,895 - 10319 mRNA_1951 0.53 -0.6
591,329 + -1.4

Or see this region's nucleotide sequence