Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1957

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10324 and 10325 are separated by 366 nucleotides10325 and 10326 are separated by 722 nucleotides mRNA_1956: 10324 - BLAST 40S ribosomal protein S1 [Exophiala sideris], at 606,971 to 607,614 10324 mRNA_1957: 10325 - K02984 RP-S3Ae, RPS3A small subunit ribosomal protein S3Ae, at 607,981 to 609,583 10325 mRNA_1958: 10326 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 610,306 to 612,524 10326

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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606,996 - +2.3
607,303 + 10324 mRNA_1956 0.52 +0.1
607,305 + 10324 mRNA_1956 0.52 +2.5
607,373 - 10324 mRNA_1956 0.62 +0.5
607,470 - 10324 mRNA_1956 0.77 +0.2
607,473 + 10324 mRNA_1956 0.78 +0.2
607,616 - +0.2
607,686 + +1.6
607,773 - +1.2
607,789 - -0.5
607,790 - -1.0
607,884 - +0.5
607,903 - +0.2
607,905 - -0.7
607,907 - -0.8
609,854 - +1.9

Or see this region's nucleotide sequence