Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1971

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10339 and 10340 are separated by 539 nucleotides mRNA_1971: 10339 - K02429 fucP MFS transporter, FHS family, L-fucose permease, at 642,692 to 644,646 10339 mRNA_1972: 10340 - K20301 TRAPPC2, TRS20 trafficking protein particle complex subunit 2, at 645,186 to 645,812 10340

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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641,693 - +1.6
641,693 - +1.2
641,698 + +0.7
641,702 + +0.3
641,703 - +0.4
641,707 + +0.5
641,708 + -0.3
641,711 - -0.4
641,763 - +0.1
641,769 + -0.3
641,803 + +0.1
641,815 + -0.2
641,831 - +0.3
641,854 - +0.8
641,865 - +2.1
641,887 - +0.2
641,904 + -0.8
641,908 - -0.4
641,946 - +0.2
641,949 + -1.5
641,971 - -0.4
641,988 + +0.3
641,995 + +1.1
641,996 + +0.5
642,001 + -2.3
642,019 - -0.9
642,026 - +0.7
642,027 - -0.4
642,033 - +0.2
642,037 + +1.2
642,037 - +2.2
642,039 + -2.0
642,049 + +1.8
642,071 + +0.1
642,091 - -1.7
642,092 + -0.0
642,174 - +0.0
642,188 - +0.6
642,189 + -1.3
642,190 + +1.6
642,198 - +0.4
642,204 + -1.7
642,208 + +0.4
642,209 - -1.9
642,217 + +0.7
642,220 + -0.2
642,222 + +0.4
642,229 + -0.0
642,248 - +0.6
642,279 - -0.7
642,294 - -0.1
642,296 - +0.7
642,301 - +0.9
642,307 + +0.2
642,319 + -0.3
642,331 + +0.5
642,339 + +0.1
642,344 - -0.3
642,349 + -0.5
642,359 - -0.0
642,367 - +0.9
642,379 - -0.2
642,381 + -0.2
642,385 + +0.5
642,390 + -0.0
642,393 - +0.6
642,396 + +3.6
642,396 - -0.0
642,407 - +2.3
642,411 - +1.0
642,419 + +1.1
642,426 - -0.2
642,436 - -0.9
642,441 + -1.2
642,445 - +0.9
642,448 - -0.5
642,452 + +0.2
642,453 - +0.5
642,490 + -1.5
642,550 - -0.2
642,579 + +0.0
642,610 - -1.4
642,931 - 10339 mRNA_1971 0.12 +0.6
643,292 + 10339 mRNA_1971 0.31 -1.2
643,761 - 10339 mRNA_1971 0.55 -0.4
643,783 - 10339 mRNA_1971 0.56 +0.3
644,298 - 10339 mRNA_1971 0.82 -0.2
644,317 + 10339 mRNA_1971 0.83 -0.7

Or see this region's nucleotide sequence