Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2013

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10380 and 10381 are separated by 264 nucleotides10381 and 10382 are separated by 707 nucleotides mRNA_2012: 10380 - K00681 ggt gamma-glutamyltranspeptidase / glutathione hydrolase, at 740,635 to 742,993 10380 mRNA_2013: 10381 - SUPERFAMILY--SSF49899, at 743,258 to 744,708 10381 mRNA_2014: 10382 - K20697 GNBP1 gram-negative bacteria-binding protein 1, at 745,416 to 747,550 10382

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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742,310 + 10380 mRNA_2012 0.71 +0.7
742,610 + 10380 mRNA_2012 0.84 +0.0
742,852 - -0.5
742,960 + +0.6
743,120 + +0.4
743,382 - -0.1
743,503 - 10381 mRNA_2013 0.17 +1.1
744,058 - 10381 mRNA_2013 0.55 -0.9
744,076 - 10381 mRNA_2013 0.56 +0.7
744,098 + 10381 mRNA_2013 0.58 +1.2
744,100 + 10381 mRNA_2013 0.58 +0.7
744,258 - 10381 mRNA_2013 0.69 -0.8
744,270 - 10381 mRNA_2013 0.70 +1.6
744,415 + 10381 mRNA_2013 0.80 -3.1
744,550 + 10381 mRNA_2013 0.89 -0.2
744,643 - -0.4
744,702 - -0.2
744,798 + -0.0
744,846 + -0.0
744,853 + +2.5
744,858 + +0.1
744,858 + -0.2
744,868 - +1.2
744,871 + +0.3
744,877 - +1.1
744,879 + +0.8
744,879 - +0.4
744,880 - +0.7
744,880 - +1.2
744,882 - +0.0
744,882 - +0.5
744,882 - -1.0
744,883 - +0.9
744,884 + -1.4
744,885 + -0.1
744,885 + +0.9
744,885 - +0.5
744,886 + +1.3
744,895 + -0.3
744,895 + +2.0
744,898 + +0.1
744,898 + +0.1
744,900 - -1.2
744,906 + -2.5
744,917 + +1.6
744,927 + +0.9
744,938 + -0.7
744,964 + +0.4
744,984 - -1.0
744,990 - +0.7
745,003 + +0.5
745,011 - -2.4
745,013 - -2.2
745,014 - -0.8
745,017 - +0.9
745,020 + -0.9
745,021 - -1.2
745,022 - +0.6
745,053 - +0.2
745,068 - -0.5
745,072 - +0.0
745,099 - -0.3
745,119 - +0.2
745,120 - +0.6
745,126 + +0.1
745,127 - +0.9
745,134 + +1.0
745,137 + -0.1
745,187 - -1.2
745,265 - -0.6
745,268 + -0.4
745,274 + -1.2
745,276 + +0.2
745,305 + +0.5
745,309 - +0.1
745,502 + -0.0

Or see this region's nucleotide sequence