Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2029

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10397 and 10398 are separated by 288 nucleotides mRNA_2029: 10397 - K07088 K07088 uncharacterized protein, at 784,732 to 786,233 10397 mRNA_2030: 10398 - KOG2260 Cell division cycle 37 protein, CDC37, at 786,522 to 787,329 10398

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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783,833 - +0.8
783,854 + -0.1
783,858 - +0.5
783,914 + -0.9
784,091 + +0.1
784,114 - -0.8
784,147 - -0.6
784,181 - -1.3
784,187 + -0.2
784,201 + +1.1
784,309 - +1.4
784,318 - -0.8
784,335 + -0.6
784,339 + +1.3
784,493 - +0.1
784,508 - -0.1
784,526 + +0.9
784,546 - +1.1
784,574 + +0.6
784,677 - +1.1
784,691 + +0.1
784,810 + +0.7
784,893 + 10397 mRNA_2029 0.11 +0.0
785,125 + 10397 mRNA_2029 0.26 +0.5
785,410 - 10397 mRNA_2029 0.45 +0.5
785,699 + 10397 mRNA_2029 0.64 -0.4
785,701 - 10397 mRNA_2029 0.65 -0.1
785,702 + 10397 mRNA_2029 0.65 -0.1
785,857 + 10397 mRNA_2029 0.75 -0.4
786,329 + +0.3
786,348 - -1.6
786,627 - 10398 mRNA_2030 0.13 -0.5
786,716 + 10398 mRNA_2030 0.24 +0.8
786,807 - 10398 mRNA_2030 0.35 +0.5
786,874 + 10398 mRNA_2030 0.44 -1.3
787,075 - 10398 mRNA_2030 0.68 -0.3
787,101 - 10398 mRNA_2030 0.72 +0.8
787,225 - 10398 mRNA_2030 0.87 +1.0

Or see this region's nucleotide sequence