Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2033

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10400 and 10401 are separated by 674 nucleotides10401 and 10402 are separated by 825 nucleotides mRNA_2032: 10400 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 794,820 to 796,212 10400 mRNA_2033: 10401 - K09595 HM13 minor histocompatibility antigen H13, at 796,887 to 798,543 10401 mRNA_2034: 10402 - HMMPfam-Spherulation-specific family 4-PF12138, at 799,369 to 800,999 10402

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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795,918 + 10400 mRNA_2032 0.79 +2.0
796,025 + 10400 mRNA_2032 0.87 +1.2
796,091 - +1.1
796,206 - +1.1
796,370 - -0.5
796,529 + +0.5
796,670 + +1.1
796,694 - -1.4
797,120 + 10401 mRNA_2033 0.14 -0.1
797,249 + 10401 mRNA_2033 0.22 -1.2
797,481 - 10401 mRNA_2033 0.36 -0.1
797,528 - 10401 mRNA_2033 0.39 -0.2
797,632 + 10401 mRNA_2033 0.45 +0.6
798,125 + 10401 mRNA_2033 0.75 +0.9
798,432 + +0.4
798,557 + +1.6
798,558 - +0.6
798,570 - -0.9
798,581 - +0.6
798,683 - +0.5
798,723 + -0.4
798,898 + +0.6
798,929 - -0.3
799,017 + +0.9
799,042 + +0.8
799,180 - +0.4
799,195 + -0.5
799,247 + +0.2
799,274 + +0.3
799,339 + +0.1
799,461 + +1.4
799,493 + +0.2
799,522 - +0.2

Or see this region's nucleotide sequence