Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2038

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10405 and 10406 are separated by 12 nucleotides10406 and 10407 are separated by 236 nucleotides mRNA_2037: 10405 - Hypothetical Protein, at 806,389 to 807,325 10405 mRNA_2038: 10406 - Hypothetical Protein, at 807,338 to 808,315 10406 mRNA_2039: 10407 - KOG2895 Uncharacterized conserved protein, at 808,552 to 810,897 10407

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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806,358 - -0.2
806,366 + -0.4
806,403 + +0.6
806,482 + -0.1
806,531 + 10405 mRNA_2037 0.15 +0.5
806,595 - 10405 mRNA_2037 0.22 +0.1
806,596 - 10405 mRNA_2037 0.22 +0.3
806,600 + 10405 mRNA_2037 0.23 -0.4
806,613 + 10405 mRNA_2037 0.24 -1.8
806,630 - 10405 mRNA_2037 0.26 +0.3
806,653 + 10405 mRNA_2037 0.28 -0.8
806,708 + 10405 mRNA_2037 0.34 +0.8
806,738 + 10405 mRNA_2037 0.37 -0.0
806,749 - 10405 mRNA_2037 0.38 +0.8
806,755 + 10405 mRNA_2037 0.39 +2.5
806,833 - 10405 mRNA_2037 0.47 +1.3
807,003 + 10405 mRNA_2037 0.66 +2.1
807,047 - 10405 mRNA_2037 0.70 +0.2
807,096 + 10405 mRNA_2037 0.75 -0.5
807,115 + 10405 mRNA_2037 0.77 +1.2
807,119 - 10405 mRNA_2037 0.78 +0.8
807,559 - 10406 mRNA_2038 0.23 -0.5
807,687 + 10406 mRNA_2038 0.36 -0.4
808,295 + -1.5
808,329 + -2.3
808,335 - +0.1
808,900 + 10407 mRNA_2039 0.15 +0.5

Or see this region's nucleotide sequence