Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2050

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10417 and 10418 are separated by 698 nucleotides10418 and 10419 are separated by 328 nucleotides mRNA_2049: 10417 - K07565 NIP7 60S ribosome subunit biogenesis protein NIP7, at 832,844 to 834,374 10417 mRNA_2050: 10418 - K02725 PSMA1 20S proteasome subunit alpha 6, at 835,073 to 836,370 10418 mRNA_2051: 10419 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 836,699 to 837,795 10419

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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834,435 + +1.0
834,438 + +1.6
834,556 - +1.1
834,579 - +1.5
834,582 + -3.0
834,583 + +0.2
834,588 + +0.9
834,697 - +0.4
834,706 - +1.9
834,713 - +1.3
834,726 + +0.5
834,730 + +0.8
836,326 + -2.1
836,519 - -1.2
836,541 + +0.4
836,542 - -0.6
836,680 - -1.7
836,819 - 10419 mRNA_2051 0.11 -0.4
836,856 + 10419 mRNA_2051 0.14 +0.4
837,095 - 10419 mRNA_2051 0.36 +1.6
837,140 + 10419 mRNA_2051 0.40 -1.0

Or see this region's nucleotide sequence