Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2056

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10423 and 10424 are separated by 47 nucleotides10424 and 10425 are separated by 379 nucleotides mRNA_2055: 10423 - KOG2817 Predicted E3 ubiquitin ligase, at 846,243 to 848,116 10423 mRNA_2056: 10424 - K11667 INO80C, IES6 INO80 complex subunit C, at 848,164 to 849,134 10424 mRNA_2057: 10425 - KOG3010 Methyltransferase, at 849,514 to 850,707 10425

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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847,299 - 10423 mRNA_2055 0.56 -1.9
847,522 - 10423 mRNA_2055 0.68 +0.6
847,670 + 10423 mRNA_2055 0.76 -0.5
847,821 - 10423 mRNA_2055 0.84 -0.5
847,966 - -0.1
848,139 + +0.5
848,144 - +1.5
848,556 + 10424 mRNA_2056 0.40 +2.0
848,706 + 10424 mRNA_2056 0.56 +2.4
849,269 - +1.4
849,273 + +1.4
849,302 - -1.3
849,410 - -0.8
849,416 - +0.6
849,437 - +0.9
849,461 + +0.9
849,595 + +0.1
849,710 - 10425 mRNA_2057 0.16 +0.6
849,742 + 10425 mRNA_2057 0.19 -0.8
849,838 + 10425 mRNA_2057 0.27 +0.5

Or see this region's nucleotide sequence