Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2059

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10426 and 10427 are separated by 238 nucleotides10427 and 10428 are separated by 933 nucleotides mRNA_2058: 10426 - KOG1128 Uncharacterized conserved protein, contains TPR repeats, at 850,790 to 853,642 10426 mRNA_2059: 10427 - K13509 AGPAT1_2 lysophosphatidate acyltransferase, at 853,881 to 854,956 10427 mRNA_2060: 10428 - K05824 LYS12 homoisocitrate dehydrogenase, at 855,890 to 857,453 10428

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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853,742 + -0.2
853,761 + +0.5
853,884 - +0.1
853,885 + +0.8
853,909 - +2.0
855,054 - -1.7
855,056 + +1.4
855,205 + +0.1
855,465 - -0.9
855,468 + +0.3
855,469 + +0.9
855,639 + +0.0
855,644 - +0.7
855,651 + +0.7
855,754 + +0.6
855,911 - -1.9
855,954 - -3.2

Or see this region's nucleotide sequence